MMLI Symposium 2026


Overview

Overview

Artificial Intelligence (AI) is transforming chemical sciences, enabling breakthroughs in molecular discovery, synthesis planning, and predictive modeling. This two-session symposium, “AI for Chemistry: From Algorithms to Applications,” explores both the development of AI tools and their real-world applications. Session 1 highlights cutting-edge AI platforms, including an introduction to the MMLI AlphaSynthesis platform, and features invited talks from academia and industry, and a panel on challenges in AI development for chemistry. There will be a mini session featuring MMLI and other NSF AI Institutes to discuss their research, education and workforce development efforts. Session 2 focuses on applications of AI in areas such as drug discovery, catalysis, and materials design, complemented by a panel discussion on strategies for building better AI for chemical research. This session will also feature a special panel to discuss the ethics and security of AI-chemistry research. By fostering dialogue among researchers, practitioners, and technology developers, this symposium aligns with ACS’s mission to advance scientific knowledge, empower a global community, and champion scientific integrity, while promoting interdisciplinary innovation in the chemical enterprise.

Agenda

Agenda

Location:
Room B401, Building B, Level Four Concourse,
Georgia World Congress Center
285 Andrew Young International Blvd NW, Atlanta, GA 30313

All time listed on the agenda are in Eastern Time. Agenda is subject to minor changes.

Session 1: AI Tools in Chemistry

8.00 amWelcome and Overview of NSF Molecule Maker Lab Institute (MMLI)
Speakers:
Dr. Kathy Covert, NSF
Prof. Huimin Zhao, Director of NSF-MMLI, U. of Illinois
8.20 amSession 1 Introduction
“AI Tools Development in Chemistry”
Session Chair: Dr. Yunan Luo, NSF-MMLI, Georgia Institute of Technology
8.30 amKeynote
“Automating Scientific Discovery”
Speaker: Dr. Andrew White, FutureHouse
9.05 am“An Expansive Suite of AI for Chemistry Tooling”
Speaker: Dr. Logan Ward, NVIDIA
9.25 am“AI-enabled Enzyme Engineering with Reprogrammed Protein Language Models”
Speaker: Dr. Yunan Luo, Georgia Institute of Technology
9.45 amBreak
9.55 am“What has Machine Learning Taught Me about Transition Metal Chemistry?”
Speaker: Prof. Heather Kulik, MIT
10.15 amPanel 1: Challenges in Developing AI tools in Chemistry
Moderator: Dr. Matt Berry
Panelists: Dr. Andrew White, Dr. Logan Ward, Dr. Yunan Luo, Prof. Heather Kulik
11.00 amAI Institutes’ Research, Education and Workforce Development Efforts
“Introduction to NSF-MMLI AI Tools and Research Training”
Speakers: Dr. Matt Berry, Dr. Cindy Chan, Saif Williams
Accelerating & Democratizing Molecular Innovation with AlphaSynthesis, an AI-driven Platform for Chemistry”
Speaker: Dr. Matt Berry, NSF-MMLI, NCSA, U. of Illinois

“Advancing Interdisciplinary Excellence in AI+Chemistry: The MATRIX program”
Speaker: Dr. Cindy Chan, NSF-MMLI, U. of Illinois

“Minecraft for Molecules enables non-specialists to 3D print molecules across the globe”
Speaker: Saif William, MATRIX-Edu fellow
11.20 amSpecial Panel: NSF AI Institutes’ Research, Education and Workforce Development
Moderator: Dr. Kathy Covert, Program Director for the NSF Division of Chemistry
Panelists: Prof. Huimin Zhao (NSF-MMLI, U. of Illinois), Prof. Eun-Ah Kim (AI-MI, Cornell),
Prof. Stella Offner (CosmicAI, UT Austin)
12.00 pmEnd of Session 1

Session 2: Applications of AI in Chemistry

2.00 pmSession 2 Introduction
“Applications of AI in Chemistry”

Session Chair: Prof. Scott Denmark, MMLI Thrust 2 Lead, U. of Illinois
2.20 pmKeynote
“Blocc Chemistry: Imagine a World Where Anyone can Make Molecules”
Speaker: Prof. Martin Burke, U. of Illinois
2.55 pm“AI and Physics-Based Modeling for Complex Materials and Formulations”
Speaker: Dr. Atif Afzal, Schrodinger
3.15 pm“Kernel Lilly: Building the Operating System for AI-Native Molecule Discovery”
Speaker: Dr. Pushkar Ghanekar, Eli Lilly
3.35 pm“Innovative Approaches in Data-Driven Chemistry”
Speaker: Dr. Andrew Zahrt, U. Penn
3.55 pm“Molecules and Polymer Discovery at P&G: From Molecular Graphs to Language Models”
Speaker: Dr. Ajay Muralidharan, P&G
4.15 pm“AI-Guided Closed-Loop Discovery of Functional Molecules”
Speaker: Prof. Ying Diao, U. of Illinois
4.35 pmBreak
4.45 pmPanel 2: How to Develop Better AI tools for Chemistry Research
Moderator: Prof. Scott Denmark
Panelists: Dr. Atif Afzal, Dr. Pushkar Ghanekar, Dr. Andrew Zahrt,
Dr. Ajay Muralidharan, Prof. Ying Diao
5.25 pmSpecial Panel: Ethics and Security in AI-Chemistry Research
Moderator: Ms. Rachel Switzky, Siebel Center for Design, U. Illinois
Panelists: Prof. Martin Burke (U. Illinois), Dr. Justin Smith (NVIDIA), Dr. Mukund Chorgade (ThinkQ Pharma), Dr. Andrew White (FutureHouse)
5.55 pmClosing Remarks by Prof. Huimin Zhao, NSF-MMLI Director
6.00 pmEnd of Session 2
Session 1

Welcome and Overview of NSF Molecule Maker Lab Institute (MMLI)
Speaker:
Prof. Huimin Zhao, Director of NSF-MMLI, U. of Illinois

Biosketch

Dr. Huimin Zhao is the Steven L. Miller Chair of chemical and biomolecular engineering at the University of Illinois Urbana-Champaign (UIUC), director of NSF AI Institute for Molecule Synthesis (moleculemaker.org), NSF iBioFoundry (ibiofoundry.illinois.edu), and NSF Global Center for Biofoundry Applications (gcba.illinois.edu), and Editor in Chief of ACS Synthetic Biology. He received his B.S. degree in Biology from the University of Science and Technology of China in 1992 and his Ph.D. degree in Chemistry from the California Institute of Technology in 1998. Prior to joining UIUC in 2000, he was a project leader at the Dow Chemical Company. Dr. Zhao has authored and co-authored over 470 research articles and over 30 issued and pending patent applications. In addition, he has given over 540 plenary, keynote, or invited lectures. Forty (40) of his former graduate students and postdocs became professors or principal investigators around the world. Dr. Zhao received numerous research and teaching awards and honors such as ECI Enzyme Engineering Award and NSF CAREER Award. His primary research interests are in the development and applications of synthetic biology, artificial intelligence, and laboratory automation tools to address society’s most daunting challenges in health, energy, and sustainability.

Session 1 Introduction
“AI Tools Development in Chemistry”
Session Chair: Dr. Yunan Luo, NSF-MMLI, Georgia Institute of Technology

Biosketch

Keynote
“Automating Scientific Discovery”
Speaker: Dr. Andrew White, FutureHouse

Talk Abstract

Biosketch

“An Expansive Suite of AI for Chemistry Tooling”
Speaker: Dr. Logan Ward, NVIDIA

Talk Abstract

Biosketch

“AI-enabled Enzyme Engineering with Reprogrammed Protein Language Models”
Speaker: Dr. Yunan Luo, Georgia Institute of Technology

Talk Abstract

Biosketch

“What has Machine Learning Taught Me about Transition Metal Chemistry?”
Speaker: Prof. Heather Kulik, MIT

Talk Abstract

Biosketch

Panel 1: Challenges in Developing AI tools in Chemistry
Moderator: Dr. Matt Berry
Panelists: Dr. Andrew White, Dr. Logan Ward, Dr. Yunan Luo, Prof. Heather Kulik

This panel bridges the gap between AI “hammers” and chemical “nails.” Leading experts from Future House, MIT, NVIDIA, and Georgia Tech discuss how to align generative AI with physical feasibility, the necessity of “AI-bilingual” researchers, and the infrastructure required to move from experimental tools to a sustained paradigm shift in scientific discovery.

Session 2

Session 2 Introduction
“Applications of AI in Chemistry”

Session Chair: Prof. Scott Denmark, MMLI Thrust 2 Lead, U. of Illinois

Biosketch

Keynote
“Blocc Chemistry: Imagine a World Where Anyone can Make Molecules”
Speaker: Prof. Martin Burke, U. of Illinois

Talk Abstract

Biosketch

“AI and Physics-Based Modeling for Complex Materials and Formulations”
Speaker: Dr. Atif Afzal, Schrödinger

Talk Abstract

Biosketch

“Agentic AI for Therapeutic Discovery: From Bottlenecks to Breakthroughs”
Speaker: Dr. Pushkar Ghanekar, Eli Lilly

Talk Abstract

Biosketch

“Innovative Approaches in Data-Driven Chemistry”
Speaker: Dr. Andrew Zahrt, U. Penn

Talk Abstract

Biosketch

“Molecules and Polymer Discovery at P&G: From Molecular Graphs to Language Models”
Speaker: Dr. Ajay Muralidharan, P&G

Talk Abstract

Biosketch

“AI-Guided Closed-Loop Discovery of Functional Molecules”
Speaker: Prof. Ying Diao, U. of Illinois

Talk Abstract

Biosketch

Panel 2: How to Develop Better AI tools for Chemistry Research
Moderator: Prof. Scott Denmark
Panelists: Dr. Atif Afzal, Dr. Pushkar Ghanekar, Dr. Andrew Zahrt, Dr. Ajay Muralidharan, Prof. Ying Diao

This panel bridges the gap between academic innovation and industrial scale. Moderated by Prof. Scott Denmark, researchers from Eli Lilly, P&G, Schrödinger, U. Penn and U. of Illinois (NSF-MMLI) explore whether AI is a transformative “help” or merely “hype.” From defining the boundaries of the “Central Science” to predicting the next Kuhn-style paradigm shift, the discussion focuses on building smarter, faster, and more integrated AI workflows for the next 20 years of discovery.

AI Institutes Session

AI Institutes’ Research, Education and Workforce Development Efforts

“Introduction to NSF-MMLI AI Tools and Research Training”
Speakers: Dr. Matt Berry, Dr. Cindy Chan, Saif Williams

The NSF Molecule Maker Lab Institute (MMLI) democratizes molecular innovation through AlphaSynthesis, a comprehensive suite of open-source AI tools and databases, and the MATRIX program, an interdisciplinary training framework. This ecosystem supports Minecraft for Molecules, a MATRIX-Edu project where modular “blocc chemistry” and MIDA/TIDA boronates enable non-specialists to remotely “3D print” small molecules via a digital-physical gaming interface. [click to read the full abstract]

Accelerating and Democratizing Molecular Innovation with AlphaSynthesis, an AI-driven Platform for Chemistry [click to read abstract]

Dr. Matt Berry
Lead Research Software Engineer

Advancing Interdisciplinary Excellence in AI+Chemistry: The MATRIX Program [click to read abstract]

Dr. Cindy Chan
Managing Director, NSF-MMLI

Minecraft for Molecules enables non-specialists to 3D print molecules across the globe [click to read abstract]

Saif Williams
MATRIX-Edu Fellow
(Incoming freshman at UIC)

Special Panel: NSF AI Institutes’ Research, Education and Workforce Development
Moderator: Dr. Kathy Covert, Program Director for the NSF Division of Chemistry
Panelists: Prof. Huimin Zhao (NSF-MMLI, UIUC), Prof. Eun-Ah Kim (AI-MI, Cornell),
Prof. Stella Offner (CosmicAI, UT Austin)

Moderator: Dr. Kathy Covert
Program Director for the US National Science Foundation Division of Chemistry

Panelist: Prof. Eun-Ah Kim
Director of Artificial Intelligence Materials Institute (AI-MI)

Panelist: Prof. Stella Offner
Director of NSF-Simons AI Institute for Cosmic Origins (CosmicAI)

Panelist: Prof. Huimin Zhao
Director of NSF AI Institute for Molecular Discovery, Synthetic Strategy and Manufacturing (MMLI)

Special Panel: Ethics and Security

Special Panel: Ethics and Security in AI-Chemistry Research
Moderator: Ms. Rachel Switzky, Siebel Center for Design, U. Illinois
Panelists: Prof. Martin Burke (U. Illinois), Dr. Justin Smith (NVIDIA), Dr. Mukund Chorgade (ThinkQ Pharma), Dr. Andrew White (FutureHouse)

Moderator: Ms. Rachel Switzky
NSF-MMLI Thrust 5 Lead
Director of Siebel Center for Design, U. Illinois

Panelist: Prof. Martin Burke
NSF-MMLI Thrust 3 Lead
May and Ving Lee Professor for Chemical Innovation, U. of Illinois

Panelist: Dr. Justin Smith
Principal Developer Relations Manager, NVIDIA

Panelist: Dr. Mukund Chorghade
President & CSO, THINQ Pharma

Panelist: Dr. Andrew White
Co-Founder, FutureHouse